Scaffold Ga0307955_1012845

Overview

Basic Information

• Taxon OID: 3300031209
• Scaffold ID: Ga0307955_1012845
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #439
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1935
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002382	Metagenome	565	Y
F013488	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307955_10128452	F002382	N/A	VTVHPRDRSVSIAASPVEDGAEPPVWPNTRVPVAMPDVTSDTRMLSMLVWVKSVLPNASVKLPPFMLSKALAGKLVRLEQFCHALTKLVPADVSIRGKLVRLEQPFQARLKLVPADVSIRGKLVRLLQFCQVCGKLIPADVSIRGKDVRLVQLYQVRSKLVPADV
Ga0307955_10128453	F013488	GAGG	VRLLQFCQVCLKLVPADVSIRGKLVRLEQSRHACPKLVPADVSMSGKLVRLVQASQARSKRVPEDVSIRGKLVRLEQLYQASKKLVPADVSIRGKLVRPVQPRHARKKLAPEDVSIRGKLVRLLQLYQAWLKLVPADVSISGKLVRPVQFCQVLLKLVPADVSIGGKLVRLLQFCHALLNLVPADVSIRGKLVRLVQSRQV