Scaffold Ga0307955_1003699

Overview

Basic Information

• Taxon OID: 3300031209
• Scaffold ID: Ga0307955_1003699
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #439
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5210
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Aurantimicrobium → Aurantimicrobium minutum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001864	Metagenome	624	Y
F047170	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307955_10036991	F047170	GGA	MTKKKNTLNAEFRDWDFVPAEEFLPPQKATTHIMAERENILTVAQLHLPEGMTRHEYALQLMKLNTSFE
Ga0307955_10036993	F001864	AGGAG	MTRYRFEIDTDNAIRIWDSETPNENNAPFMFQPDWPDVTPWADAAQATDWAEVFIASLVDPLSEFVAGNSPNTHPALRPEPEPAPE