Scaffold Ga0307931_1030107

Overview

Basic Information

• Taxon OID: 3300031208
• Scaffold ID: Ga0307931_1030107
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1461
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012504	Metagenome	280	Y
F013056	Metagenome	274	Y
F028317	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307931_10301071	F028317	N/A	MLSNYDLDELVIKMGINNFKGCFYKDTLKKIEPSSSYIINLNSEFNEKQERNAGSH
Ga0307931_10301073	F013056	AGGA	VISISGAEIEQNKMEGTGLFAGSGNKSGKISRIKKAHKWRDFSNDTARMGIDTGRYGYEQFQEAKNPLRSEGKKAIKGFSKMFGGEMEGDGFFKDVKKKYNRNVKNSALGEALRNSAGLAITDGYNLGQKELGKYKYGKPVSQYMLNKKGSNVDKLTGYTGLG
Ga0307931_10301075	F012504	N/A	DYKNWLKKPYYYVNCSRIPSEQQQAYRSLQIKGTNSSALTVDSVIYAIYSKSFQLDIISGNINKID