NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1026399

Scaffold Ga0307931_1026399


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1026399 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1661
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003482Metagenome / Metatranscriptome484Y
F026120Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10263992F003482N/AMDEEFKKSVHNSYNLIKRDTGSIPSADELNDTNKGQWVEHDDSDFAKVFNGLLDYTNDDDEFDNLDWNSVNYEVYGADYYQERFPGFADEVYEILAKSTEEENKVIDNRIPPLKITEGPVTVSFD
Ga0307931_10263994F026120N/AMALEIKETPNKRLKIMNTPNNLDKPLAPDIPYPLPPNSGFNFIISGASGSGKTTLLTSIMSAKKVNGIRQSYRKCFNKILICSPTLGAGKSAKQDVFADVRAEQKFKEFN
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