Scaffold Ga0307931_1007534

Overview

Basic Information

• Taxon OID: 3300031208
• Scaffold ID: Ga0307931_1007534
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5461
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006034	Metagenome	383	Y
F008533	Metagenome	331	Y
F030493	Metagenome / Metatranscriptome	185	Y
F068557	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307931_10075343	F006034	N/A	MLSNHDIDELVVKMGIPKFNGCYYKDTLKKVEPNSSYIINLNSEFNEKNERNKGSHWVAPITDDIKKAIYFDSYGEREPTQIKNLLKCNQYKLGHTSKNIQSLMSNLCVFFCLAFIYFLTVSKQRTKNIIQDTAIFLNLYEEI
Ga0307931_10075344	F068557	GAG	LSRTRTRCEFRFKTLALDIFKTLSLPIEDISIDGLVYLNKIYNKYVNLVENLTILNQMNKKDNLLVIDPKLLNLDDGSSLSSNGSNPIRHKENDL
Ga0307931_10075347	F030493	GAG	MVKRKLGRFGYELDKANTDKDVLTAKRGNNIHINYTGTNVISPRDIISDVALATCAQRINPQFKERRQKTREIMRQYGDDKDYSLGGHSLGGSNTMKQSKSIRDRVNVVHAFNPGYTKAFHRSIKVINQ
Ga0307931_10075348	F008533	N/A	VDDGGKAITFSEWATLAQDRAGWLKLVTKAPFNIGKPQLRPPRCDTRVTPEEKRRFLAWRAQETEQRRALFNAETDAETT