Scaffold Ga0307931_1007260

Overview

Basic Information

• Taxon OID: 3300031208
• Scaffold ID: Ga0307931_1007260
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5600
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007549	Metagenome	349	Y
F010055	Metagenome	309	Y
F029560	Metagenome	188	Y
F033322	Metagenome	177	Y
F093309	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307931_10072602	F093309	AGG	MEGNNNPDLLRKFKIVLLKMKNNKLISLQEYNEVLNILLEIDI
Ga0307931_10072603	F010055	N/A	MENFYSRKDVKKYCVKADNPNYDLHHFDTPFRSLVVAPSGSGKSNFITNLISFFCKGKGTFDSIFIFCKSRDEPLYQFLGDKSKGLIEVHEDLEKLPA
Ga0307931_10072604	F007549	GAGG	MFLSQSYYNTPKIIRQNINYLVVLKLGGTRDVNSILRECSIGLTKEQLLSMYKEATRDKFDVFIINLDKNTNERYRHNFLNYFIFE
Ga0307931_10072605	F029560	N/A	MKGGSLRPQEIKDFLEASYEKNAPFNIDGYELDGKLSNLYGKVYVNHDLKKAVLAFRGTGMENLGTDWINNLIFAVSDPGYKLTPRYQTALKIYKSAMNKYQGYKFELLGHS
Ga0307931_10072606	F033322	GAG	MTVPKKALNSILYPQWTKKDMVNIEKKTGNPITEHKVDILDRLNPNMIIGRGVGRQMIIKNMRYK