Basic Information | |
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Taxon OID | 3300031208 Open in IMG/M |
Scaffold ID | Ga0307931_1002853 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Organic Lake, Antarctica - #47 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10844 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (5.88%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Organic Lake | |||||||
Coordinates | Lat. (o) | -68.457 | Long. (o) | 78.1911 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012843 | Metagenome | 276 | Y |
F032108 | Metagenome | 180 | Y |
F104506 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0307931_100285311 | F012843 | N/A | MKDQDKIMYYKNKYNITNFTSYEDLRRSIYNYEMSNFVDLVYAGKDKNTHEFGMYLVSL |
Ga0307931_100285315 | F032108 | N/A | VYDLLKKENEIIEYIETKYDKLSTIKSKLCGMLKVYNLLNLESNVLKSKIDHYMVSLSIQEDKKKEDPIDKKTIKEAELIVNYFENELKTMEEEISKDVDILNTWDKTAQLYAVLKIYLTYGMLRPSEIMDMKITDTDEGNEKKNYINVATKIIIIHNHKNDRKGTKVVDITDDTLNDILCKGLNSYLVTNHSGEVYTSSSSFSKMFKSRFNDYNPYDLRKCISSLAIHEGDPEKIKMLEHNQGHCLNTILKNYNTYNKVEV |
Ga0307931_100285316 | F104506 | N/A | MLELVEKIKEMCTALGYQGNMETDFVYYNADVDQQTKNEIRNVNDYWLNRKLVIFNNTITAGVSYTNTPFDDCYCFIASFNSPRDIAQVSYRARSLSSKTIKIKYMSGIKTEAWGDDRITFNICTGYNQLYEDTLTEAKSSLKKTVLKFFEEANYIVKDPLVLLYTNEELTKIYKECSPNWYDYNAIENINSQQFESIAQTKFKNGEEGWLTTQDILSARKYVYDSHFKPTVSESNRAKIWNTDNANTLIMVHEACNNPQSFETILAKDINWEFFPYIEKASQRWDIKFSDEARKSIFGQFQALRFDSNTMRIHILLKTIYNTKYHKSIMSSKGKGKHVYYEGIKDDSLDMVVEVAKNGLNEQAGKCLIQDEPA |
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