NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1002853

Scaffold Ga0307931_1002853


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1002853 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10844
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012843Metagenome276Y
F032108Metagenome180Y
F104506Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0307931_100285311F012843N/AMKDQDKIMYYKNKYNITNFTSYEDLRRSIYNYEMSNFVDLVYAGKDKNTHEFGMYLVSL
Ga0307931_100285315F032108N/AVYDLLKKENEIIEYIETKYDKLSTIKSKLCGMLKVYNLLNLESNVLKSKIDHYMVSLSIQEDKKKEDPIDKKTIKEAELIVNYFENELKTMEEEISKDVDILNTWDKTAQLYAVLKIYLTYGMLRPSEIMDMKITDTDEGNEKKNYINVATKIIIIHNHKNDRKGTKVVDITDDTLNDILCKGLNSYLVTNHSGEVYTSSSSFSKMFKSRFNDYNPYDLRKCISSLAIHEGDPEKIKMLEHNQGHCLNTILKNYNTYNKVEV
Ga0307931_100285316F104506N/AMLELVEKIKEMCTALGYQGNMETDFVYYNADVDQQTKNEIRNVNDYWLNRKLVIFNNTITAGVSYTNTPFDDCYCFIASFNSPRDIAQVSYRARSLSSKTIKIKYMSGIKTEAWGDDRITFNICTGYNQLYEDTLTEAKSSLKKTVLKFFEEANYIVKDPLVLLYTNEELTKIYKECSPNWYDYNAIENINSQQFESIAQTKFKNGEEGWLTTQDILSARKYVYDSHFKPTVSESNRAKIWNTDNANTLIMVHEACNNPQSFETILAKDINWEFFPYIEKASQRWDIKFSDEARKSIFGQFQALRFDSNTMRIHILLKTIYNTKYHKSIMSSKGKGKHVYYEGIKDDSLDMVVEVAKNGLNEQAGKCLIQDEPA
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