Scaffold Ga0307500_10059704

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307500_10059704

Scaffold Ga0307500_10059704

Overview

Basic Information
Taxon OID	3300031198 Open in IMG/M
Scaffold ID	Ga0307500_10059704 Open in IMG/M
Source Dataset Name	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	943
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.6996	Long. (^o)	-121.669	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060881	Metagenome / Metatranscriptome	132	N
F073608	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307500_100597041	F060881	N/A	FVPTSVCALDIGARLPIKYGEIFMVRNDGGISNWSSYFPYGATCPVKWRLPMWLVVTRVVADRVLLTVDLNNQVAELSCPHGTETSMSYAQARKRYADYVRALDDKFFSDLNVGN
Ga0307500_100597042	F073608	GGA	MRALVVAASLLVPVPAFALEIGARLPTRYGEVIVVKNDGGVKNLTTYFPYGSICHTDLDLKTWLIVKRIVGEQTLLVVDFGVESMRLSCPHGTETNTPYAQARKRYEDYVRALDDKFFSDLNGGN

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