Scaffold Ga0307499_10001364

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307499_10001364

Scaffold Ga0307499_10001364

Overview

Basic Information
Taxon OID	3300031184 Open in IMG/M
Scaffold ID	Ga0307499_10001364 Open in IMG/M
Source Dataset Name	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7207
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.5468	Long. (^o)	-122.376	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062100	Metagenome / Metatranscriptome	131	N
F069031	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307499_100013643	F062100	AGGAGG	MALDFTIITDVRQRFGDMIRDEKPSLRERESGIEDDAPFVGWEKSFAFRCPSVDRSQFALLLFQTLGVSVRQGLEINGQTIFGGIAPSVDFESRILGSGSEAHQDRSAIARWNGNVMLIHPNVLQESNILRVRAAEMTAGNVDDFVMDNVVVVFKTGRSAAANTGSVVATAKPRGKKRAAKRAKKRR
Ga0307499_100013646	F069031	N/A	MKPRITVEPAVDGAGVRLDGKRVSSACAALGVFMVVLATVLPAYWYAVPLLFAGIALIAVSHVLTPCQDQITRWWRSRISKSSSPDRT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.