Scaffold Ga0307498_10029381

Overview

Basic Information

• Taxon OID: 3300031170
• Scaffold ID: Ga0307498_10029381
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1339
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068279	Metagenome	125	Y
F083401	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307498_100293811	F083401	AGGA	MAEIKRVYRNDGAVKRTFIWEDDQPEIIRVYTEQDMTQTIENNKVMRELHPRYSTNKLVARGVPVSVAEKALREQWDQRDWAKWLDDSDNAAFRVWTGRVGK
Ga0307498_100293812	F068279	GGA	MTGFLSDKCTEIRSWLAQGSDVYPDPVVTSWIRMAEEHLSSALRVKHMIQIDTCTLVQDRVTLPKDWQEIRLARLLPAGTVCRYQTPDAFYNPEWPGAPAVPYPGKTKRYTILGNYLIVGEVTPSPGLLVELTYYQDIPPLLDATNNWINQYHTTVYTLKILHIASMYSIEDERSSGWATEVNNTVNLMNIAHTVDKASGSVLQQVRRKTFG