Scaffold Ga0307498_10003606

Overview

Basic Information

• Taxon OID: 3300031170
• Scaffold ID: Ga0307498_10003606
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044063	Metagenome / Metatranscriptome	155	N
F052710	Metagenome / Metatranscriptome	142	N
F067783	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307498_100036061	F044063	GGCGG	VALTQFIVLKRKGNWAVKFNDQEQSYSAPLEAMQAAIRLANECGKNGKPSVVLLEGAKGFDTIWTYGESPFPPSKSDLPSLPKAS
Ga0307498_100036063	F052710	GGAG	MGGKYSAEWWEKIAGLNRELPAQDPADVVDHLIQATAHGARSPAKSAKRSSQGPAGSKRERSLAD
Ga0307498_100036066	F067783	GGAGG	MSQIDPWEKAADCERAVQAAADPQQKKIFKNLRYLWIALANESDCMSADEFAREIEVIGRLHVELALVESPSLH