NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308023_1021837

Scaffold Ga0308023_1021837


Overview

Basic Information
Taxon OID3300031167 Open in IMG/M
Scaffold IDGa0308023_1021837 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #418
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002321Metagenome / Metatranscriptome571Y
F083269Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0308023_10218372F083269N/AMSIKKVSVTKTSTFIIDGEGVVPRERIVDLSHNWTEKDVILFKKIAKQGGTVRIQDVKYIVRPGEQITNSQFQRDGGAAKMHGPEE
Ga0308023_10218374F002321N/AMIDLNKEMAWVTFLDNGWETKWFPVLCPITKRQLEFDVSIMDHCRLQFNKKDNWVSFGIAPTSQMIMKNSVRDNL

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