Scaffold Ga0308023_1000047

Overview

Basic Information

• Taxon OID: 3300031167
• Scaffold ID: Ga0308023_1000047
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #418
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36623
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (62.90%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F016292	Metagenome	248	Y
F021402	Metagenome	219	N
F023243	Metagenome	211	N
F077486	Metagenome / Metatranscriptome	117	N
F077795	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308023_100004715	F016292	N/A	MEKRIRKIGDCYTKFGLKHTSKSQNTIPDDIRFRNYIVMTPKEKRDMPKNCSFEGGTLEHELVQIHYTENKTLEEALNFDSVQDRINNYSPVDEKDKIKFEHIVERLIPVAQNHLDNVGELPKQKWKAELEYTHWDDRIQTYFLSYVDLIGETHFGDIKNVFGTLVKTKAGYSYTKKKCPLVPFHSDCLQISLYQKLLPKLKPFLTYASDSDKRIFTPENCTELRPESLEHYYDELVLYQRCWEKKLELADGDINTLALLCKPDFSELRKNSFWWKGTDPAVIKRFKGNYGF
Ga0308023_100004718	F023243	GAG	MSPEIELDLYEITTAAQTGLLRVTESIKQKQEWWHGYKGTLEDKIAKSISGAMAEIALCVYLKTPFEFHTNVGSAPDVKYKNYNIQVRSQTPKKNNNNSLIIRPGGVKPNEIYVFVLSEAPKFTIKGFINSSAVIGKDDYLTDFNLARPKVWAVPLKILNPIILLKDESLN
Ga0308023_100004721	F001839	GGA	MKTFEKFHTDLLNNKVLSANEKVVYIICKSFENAPMGCRISHKYLMDRTKIKTRKTLIKILDRLTLFGMLARKQIDNSTCHYVFDKTTMQEYINHNINKRRRISLGKQKNSPQINPQIDNVINILRKDK
Ga0308023_100004723	F021402	GGAGG	MITNNLTIDELDRFLQISSFCDSKMPKVKAKSLPTMFKVIDNAIGIGEDAESIKNLDKYAATLKITLTSRQITIYDFVLLVMLDAKASDRELIYLRNFPHRLSLRKMKRMYLDWSHTKIGYEYEKALKNVCKYANRNLKKYI
Ga0308023_100004724	F077486	N/A	MLTHLDSLLTESERNNMFRNNKISSNTVNMFKLDIVKIYAKKDLLKDIIKCPKLQKKHKLLSFNPIECN
Ga0308023_10000476	F077795	N/A	MKIINIEKEPQIYFLFNKNKLVYIGETKVENGKRINQHKDKKFDKAKCISSKKLNFLNNEYFRKYYELRLINRFKPKYNKEKTKAPSLNNFICKIFLFNENPNPQFITPLTAYNQIIYKGKYNKFLEYKNKRRNKKCLNQYTKVWDNLDINKKLYINNQNAFKFLVNETMKLPKNLSIKFTPRIEKLHN