Scaffold Ga0307502_10000792

Overview

Basic Information

• Taxon OID: 3300031164
• Scaffold ID: Ga0307502_10000792
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8010
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018492	Metagenome / Metatranscriptome	234	Y
F063249	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307502_1000079210	F063249	AGTAG	MSNEPAGRLSGEDILALKFAAHRQLARWAKKPSLSPRQHAQRNALKRAVRVLQDQAFADGCELRASSDGGER
Ga0307502_100007925	F018492	GAG	MTLGDWRKIERGLFESADGQWRIANPWKLTTELRHRWLVAERRSSGSGWNMHDGDHATVHDACAYVESLTSSRAGA
Ga0307502_100007929	F018492	GGAGG	LTPDGWCKIDRGLFESVDGQWRIANPWRLTTELRHRWLVAERRCSGSGWCMHEGDHATLHAACAYVEAQQPA