NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307501_10217033

Scaffold Ga0307501_10217033


Overview

Basic Information
Taxon OID3300031152 Open in IMG/M
Scaffold IDGa0307501_10217033 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)45.9233Long. (o)-120.701Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010438Metagenome303Y
F059517Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307501_102170331F010438N/ASIHRFGHSDMTRLVFATGRLLELYMWNRRPFMSASDLETVSYATRRVAKALAEAPHWQIIETYWNTAMQQNNIWSIAFEARTKEILKEVC
Ga0307501_102170332F059517AGGAGMLNQRPTVDITRSNRYQVRAQVDKVKSHFIQSVRDNIAEHYDLHRFESTAERLEFIDSLLADNKYLFPVAERVEGGVHGPNPTQRESKADIKWLA

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