Scaffold Ga0307501_10014625

Overview

Basic Information

• Taxon OID: 3300031152
• Scaffold ID: Ga0307501_10014625
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1388
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F001935	Metagenome / Metatranscriptome	615	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307501_100146252	F000805	AGGAGG	MGMPSGESPEHAQQYYQYLQAHKETMQHADTWHVQWIQLAWLWGFVIALSLALLLWIWQYRSTRQKAGPYPVDSFGGYTTELAGPATLFFLLLTVGLTAWAVVLVVGHIVWGQKF
Ga0307501_100146253	F001079	AGAAG	MAVELTPAAPSALPYVSWSSWGMAVIPAADWPLVFGSMQALKGHVQEYPGCQKLEAFVEPEGADYRIHCYTTWDTPEQLEAFLARGYTFERMLADVGLQAEPPRIMEKIF
Ga0307501_100146254	F000280	GGAG	MAEEQRPARPLVGYRDVGEDVRHSRPQIVRSWIILAFLIVLFFAWTLTVYFLEPGLR
Ga0307501_100146255	F001935	AGGAGG	VYLKHLSSLQFLTYISFFAVVMAALFKFVPGRSPPVRETPYPDEELHAHDPKAAKYFLAGGFFLVLGSLHMAVKNLPWLAEYLARTGYAGHLVRDLSNTHVMIVGGGT