Scaffold Ga0307501_10012669

Overview

Basic Information

• Taxon OID: 3300031152
• Scaffold ID: Ga0307501_10012669
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1450
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005332	Metagenome / Metatranscriptome	404	Y
F082482	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307501_100126692	F005332	AGGTGG	MTPSRLTLFYVTLSCSTPLWSCSGDRSRSPTCGMAQLIGPSLIQDRLRHLPFVLTDAPRGLPGTLPVRVVGTPQQSTVLVTYPKGALTMEYQGAGFPAPSVSDTTAYALLVVDDSTQRAEGVLLYESRRPPEGYPSIGALTGQDRTIPLYGVRVDWAGVSNPKCPLLGAPSGSPSPAP
Ga0307501_100126693	F082482	N/A	EKPARARARTAAWLVGDTLRFGTSLVPDADSLELRRVSPDAPYPASVLEVVTAP