Scaffold Ga0307501_10001562

Overview

Basic Information

• Taxon OID: 3300031152
• Scaffold ID: Ga0307501_10001562
• Source Dataset Name: Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2579
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062100	Metagenome / Metatranscriptome	131	N
F069031	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307501_100015622	F062100	AGGAGG	MALDFAIITDVRQRFGDMIRDEKPSLRERESGIEDDAPFVGWEKSFAFHCPSVDRSQFALLLFQTLGVSVRQGLEINGQTIFGGIAPSVDFESRILGSGSEAHQDRSAIARWNGNVMLIHPNVLQESNILRVRAAEMTAGNVDDFVMDNVVVVFKTGRSAVANTGSVVATAKPRKKKAAAKRAKKRR
Ga0307501_100015625	F069031	N/A	MKPRIVESAVDRAGVRLDGKRISSACAALGVFMVVLATLLPARWHPVPLLFAGIALIAVSHVLTPCQDQITRWWRSRISKASFPDRT