Scaffold Ga0308025_1009327

Overview

Basic Information

• Taxon OID: 3300031143
• Scaffold ID: Ga0308025_1009327
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #422
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4068
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F007827	Metagenome	344	Y
F042015	Metagenome / Metatranscriptome	159	Y
F087890	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308025_100932711	F007827	N/A	MKLTNKQKRSIKRRVNLDLGINVPTTRIFVSKKIYTRKIKHKLWKK
Ga0308025_100932712	F000126	GAG	MGRSNNGDINHNDNDNKMSKRDFKITKKDGEWYNTIVTDSYGKVYQNWYETASEASKWVMYIWEKEDWFNSVNSEELLYKAIQQCKAIDKEKGIGSIL
Ga0308025_100932714	F042015	N/A	MKIDKVRAHREELKRLLFSVPTEGRKVTKTITVTMIKGIDGKPNQWWPGYGHVSINSDGPDGFCHFSTSQEHPMKYALNTKEYKSGEYSLIIK
Ga0308025_10093273	F087890	N/A	MKKFLKKRSGAIMLGLGAGILTLDLMGISGVVTFAIGVILIVEGIDKV