Scaffold Ga0308025_1005632

Overview

Basic Information

• Taxon OID: 3300031143
• Scaffold ID: Ga0308025_1005632
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #422
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5339
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F009987	Metagenome / Metatranscriptome	310	Y
F052862	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308025_10056326	F052862	AGGA	VDDNEQSRESQTQILEIKKDIEHLLYVLEEFEKDKEFLKHHISEKNTQRLEDVSKINARFDKHIQTELTYHESVRDKIVAEHRIIHKRIGQVERWVWVFFGGFTVISALLGKASFSTLFG
Ga0308025_10056327	F007004	AGG	MKNIILGLCLILFVGCANSNAYQKPTVRIVGEAQMSKLSNGNYEVTPRWIKDRFDAENSMIKQLEDCREGGR
Ga0308025_10056328	F009987	GGAG	MIGSIIGNALGLGLKIMDKIEKNSDKASFEEFKARKKEMDNTLADSDVEGIDSMFEYLADRARGGSTGRKG