NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308022_1094183

Scaffold Ga0308022_1094183


Overview

Basic Information
Taxon OID3300031142 Open in IMG/M
Scaffold IDGa0308022_1094183 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #353
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015147Metagenome / Metatranscriptome257Y
F047104Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0308022_10941832F015147GGAGGMKNKIKWLVNDLGLNELNAYLFITGGAILTATALVLLSGDASEVWRYWRVFFLKLY
Ga0308022_10941833F047104GAGMKNEMTMTEIRRHTAAKRERQAKRDTFTLNGNTYEVSNDPAHKRDMLAGYCGNNPK

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