Scaffold Ga0308022_1011983

Overview

Basic Information

• Taxon OID: 3300031142
• Scaffold ID: Ga0308022_1011983
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #353
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2849
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F061282	Metagenome / Metatranscriptome	132	N
F068119	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308022_10119831	F061282	N/A	FEQFLNEDAPVTATGGVATRGIPLGAPPKGVVMKRFAGMDVFAVNPSHYSKANNKKKKYDRYSRYVGEDDAGTYIRMFARKYPKKPIIVMDSDTGCMQFLRHGFGK
Ga0308022_10119832	F001334	GGA	MMKFKEYLQVNADDSIEQVMSGEWISKGRSTWKATDDEENTLEIHNDGHDPELQGESWTVHTNTFAPKAFAFFCKQFIKEVNPSELSYARTRIFPTT
Ga0308022_10119833	F068119	GAG	MPEQESFLQLKADIQTLKIKDEYRTKELDALMKKLDASTSKLNDLSENIGRLLSAQDVNKTNDNEFRDEMKILHSRIGDLQDKMNKMVDKTETRMNSDINLIYTKLESLERWRWITIGAATLVAWLLTNVIPKVIP