Scaffold Ga0308022_1007570

Overview

Basic Information

• Taxon OID: 3300031142
• Scaffold ID: Ga0308022_1007570
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #353
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3630
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308022_10075701	F016619	N/A	LTGKTLSIQAELTSKLKSTIVDVTYGASDGYATNGNVVDLSLGSRISTVIGAQILHCNKGLLLQYAPAAAGAAATGKIKCFGHTPTSSTSTVVALEELDNADTAVNSMTIRIRIIGY
Ga0308022_10075703	F034394	N/A	MVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNILILDNSEGDKIEIWKGETDSWENVVGQDQWYHCEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTDVPLDVADAVIKMTAIDIMNTSFRMDEIPSGGSVSPSESKKYWQEDIELCISNRRETFVIP
Ga0308022_10075705	F042629	GGA	MTIITYDALDDVISLIKSKWSNLRPPTISKIWDKRTVGFIDDRSDQVILSPKAEAIQIFGLGGSSYWHNQMIELEIRTYQDIDRHNSVVKEIAKIIKDNITGSTYTDLRIISSLSKNFQYRNMFSYVLTISYRKSDPV