Scaffold Ga0308021_10035741

Overview

Basic Information

• Taxon OID: 3300031141
• Scaffold ID: Ga0308021_10035741
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #351
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2106
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308021_100357411	F003020	N/A	ILVPYNNIKKEKIMPDISKFKSVSVSVGTHKKLEAMAKSRFEVPVSIQKLIDFLIVNTPKKVGKRRVS
Ga0308021_100357412	F004988	N/A	LENVELVKTICPRCNGNGYIRIMPVIATVGDTSSETDCTMCEEIITHMGQRITTHNGYVMLPKNQTRINIEGGRESKTKWSGETLPEVGK
Ga0308021_100357416	F030928	AGGAG	MKEKLTALEVYISTLILVFTITICLIVIVVNSRYIAKMEDTIDTMWYEIEQVKETNLSLYQFIEEYGNDIKGR
Ga0308021_100357417	F000720	GAGG	MILKEDKIVRATIPDRMMSTTFTLPIDDRKVVGIVNYTADNNGVIPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKELADTLSQDNIIGQMINYFHKNVEDIIMGVQPDKKQRMLSTDP