Scaffold Ga0308021_10013597

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308021_10013597

Scaffold Ga0308021_10013597

Overview

Basic Information
Taxon OID	3300031141 Open in IMG/M
Scaffold ID	Ga0308021_10013597 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #351
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3558
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5596	Long. (^o)	77.8957	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053567	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308021_100135976	F053567	GGAG	MNVNELTNVTIGGICTADYPDFVDAYIESADDMGGNPLSDEQLEALTDDNPEFVQAQAHDEIMGWI

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