Scaffold Ga0308021_10010177

Overview

Basic Information

• Taxon OID: 3300031141
• Scaffold ID: Ga0308021_10010177
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #351
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4130
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006146	Metagenome / Metatranscriptome	380	Y
F014792	Metagenome	260	Y
F097510	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308021_1001017712	F097510	N/A	MIKPFRIIWELIEFGLQALFVYVLVIIIFIGVLFTIIHKEKNKEQEWNEAIEEAKIEYKKECTRIDGCRILKNGTIEW
Ga0308021_100101773	F006146	GAG	MIITTTTMIIVQVIIVGCVLWMNPEPCPRKYRVTQDQGGVLANMADVHRYCELDYGGKFMLKEEYIEEIIDAQQRLTD
Ga0308021_100101775	F014792	GGAG	MKTLHERENYSWGILQDMIEREVSSAFKIREPIEMPSKKEIKQTIKQTIKALK