Scaffold Ga0308021_10008789

Overview

Basic Information

• Taxon OID: 3300031141
• Scaffold ID: Ga0308021_10008789
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #351
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4444
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F029595	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308021_100087892	F029595	AGG	MKCFESPSGMKNPIIWHKRQSVRDFVKQKPMFSQLMQESKNCMLNHPELKNNVKGAIQCETIHPATMSQFNNYTFHTHPHNIPYPSQTDKNTTRNLKKKYLLIGVVPQNKTYVFSDEDNFEKSIATI
Ga0308021_100087895	F012639	AGGAG	MSSNNSGLVLNCTATYAAAAPVATVLSVTMQTSPTVAGVTELQVPLTENWIATDVYILAAGGAGSATVIAPVITMDKNRGRTLVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAISNIQFSVAISIV