Scaffold Ga0308021_10008772

Overview

Basic Information

• Taxon OID: 3300031141
• Scaffold ID: Ga0308021_10008772
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #351
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4448
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F053638	Metagenome	141	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308021_100087722	F016619	N/A	MAIAIVQNADHKSLTGKTLSIQAELTSKLKSTIVDVTYGASDGYATNGNVVDLSLGSRISTVIGAQILHCNKGLLLQYVPAAAGAAATGKIKCFGHTPTSSTATVVALEELDSADTAVNSMTIRIRIIGY
Ga0308021_100087723	F087902	N/A	MTYTNHNVKDISASGTVKAGHGVMVAVYVTKAGAAGDKVVFHNGADASAPAEFSVYGEGIQHVQDVFRRFEAGIYAEVTGTTARYITVFK
Ga0308021_100087724	F034394	N/A	MVTTTTYCTVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITKETHNLPLLYTFGWGTPVFLKHRHILDFDLSAGDKIEIFKGESDTWENILGNTQWYNIEPVYGTLFLRGFLFTILRHNRIRVTYRYGGEDFAGDTVVPLDIADAIIKMTSIEVMNTSFRMDEIPSGGSVSPSESKRYWQEDIDLCISNRREVFTIT
Ga0308021_100087726	F042629	GGAG	MTITTYDAVDDIIDLLRTKWSSLRPPHITKVWEKRTVGFIDDRSDEIIVSPKGENIEVFGLGGSAFWHEQIVELDIRTYQDIKRHNKVVKEVVKIIKDNIVGTTYTDLRVVGSYSRNFQFRNMYDYVITLSYRKANPV
Ga0308021_100087728	F053638	N/A	MTLIPVDIIYNGKPAVVEFEDSLTFGDTETLIGNSVDISDVTKPKIDIQRYRINLLVLTIKKAPFKIGDVTTIKMTDSKVIKSILKEIVKIHPLTTYIEDWMETFMSSQDMKNLDMPSTTTVPHNSAGTKKQSIGKK