Scaffold Ga0308021_10008670

Overview

Basic Information

• Taxon OID: 3300031141
• Scaffold ID: Ga0308021_10008670
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #351
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4480
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023712	Metagenome	209	Y
F055187	Metagenome / Metatranscriptome	139	N
F080151	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308021_1000867013	F055187	N/A	MRAMYKNAANLIGLKPFKDAKLLKHEAIERMKRRMKRNLKEAQEKARLAQPYVRDADAPSFDGPWLG
Ga0308021_100086702	F023712	N/A	MRDRMKYKITWKNEDTNRVSSKEFTGKDGKDHSAMDEALEVAQEADGNLWPWVLERDGYEIADGWGGDQLNRGRLFPTCG
Ga0308021_100086708	F080151	N/A	LTFDEKSTILFEVMSESYYMKDEDGLFRMFDVSHDGLEDAIEAANEAGVDVLRDRDGETETVWSFDDAGNDEPWDGFNSDAEADGDALASAGFGTDEDYGGCNDYGCEY