NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308021_10001640

Scaffold Ga0308021_10001640


Overview

Basic Information
Taxon OID3300031141 Open in IMG/M
Scaffold IDGa0308021_10001640 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #351
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10257
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F105339Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308021_1000164012F001048GAGMKIVSTKQFWWRFNDLKRKGGEIIVTDRTPEMDVKEYNRIESLVNKRVRWELGSECYMKWDSCGVKDIPTLAKAYGIK
Ga0308021_100016408F105339GAGMINLTGTHEECMKEIDSAPISEGFKAHIRKDLQKQMDRCLDLSIEHVGNRIPIHELVPKGMSIKKYFSKEERLARGENITYVSFD

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