Scaffold Ga0308024_1042289

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1042289
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1229
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F025387	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_10422891	F003834	AGGAG	MSSTRTPIRQAEMDYLDHFMETKYDERKNVLKTEMQDTIDAESEDNFDAFKEKLKLTKLHEDVRTNYNDHEKFANEMDSTLLLKKGKLDNSINDLEVKLENWKKVRKWDTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDMSKEYCK
Ga0308024_10422893	F025387	GGA	MTRIEKVGEMLVRAFTYPIRATIGVCKCIHKSTPDTLNMPFEIKLKKEDKNADNA