Scaffold Ga0308024_1036014

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1036014
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1354
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F029567	Metagenome / Metatranscriptome	188	Y
F035963	Metagenome	171	Y
F059346	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_10360142	F029567	AGG	VLISLTFLTGCSGTLTQLIAPIASFGLGLYNADSYYSKECVWYEPVKFSPKTKEWLRSTKPPTHVIKDVAKVARNNDLFKEVCK
Ga0308024_10360143	F002078	GGAG	MEMMMSQSWFQIAGEIVLMFTALTGAMPDRFVAKIPVLGKLWPVFNWLAGNVFNNVNHPKGMAALSEVEDEIDKAKAEVRDRVDLPDVLDGV
Ga0308024_10360144	F035963	GGA	LDKINEVVIAVSSGTLGICLWIFKRMFKSIDVAHERLDKIEAKQVDRQYLENQLSPIRHDVNIILQHLLANKNREK
Ga0308024_10360145	F059346	AGTAG	MEKILESAWALFVAIGWFFINRITAKVDALEKEKADNSAVGRHSELIHETDRRIDELQHTTVPRQEYKSDIGALHMRANELERSKEDKVTDVRILETGGTSSNAKKGK