NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308024_1023424

Scaffold Ga0308024_1023424


Overview

Basic Information
Taxon OID3300031140 Open in IMG/M
Scaffold IDGa0308024_1023424 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #420
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016292Metagenome248Y
F030882Metagenome184N

Sequences

Protein IDFamilyRBSSequence
Ga0308024_10234241F030882AGGMDFKGLVDHYQTLPKSELIEKLVFKNAKLLTQDNVIEKLEDEIKRIEEVDQGHQKLNSELLEENNQLKKQKEILQK
Ga0308024_10234242F016292N/AMEKRIRKIGDCYTKFGLKHTSKSQNTIPDDIRFRNYIVMTPKEKRDMPKNCSFEGGTLEHELVQIHYTENKTLEEALNFDSVQDRINNYSPVDEKDKIKFEHIVERLIPVAQNHLDNIGELPKQKWKAELEYTHWDDRIQTYFLSYVDLIGETHFGDIKNVFGTLVKTKAGYSYTKKKCPLVPFHSDCLQIALYQKLLPKLKPFLTYASDSDKRIFTPENCTELRPESLEHYYDELVLYQRCWEKKLELADGNIETLALLSKPDFSELRKNSFWWKGTDPAVIKRFKGHYGF

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