NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308024_1014384

Scaffold Ga0308024_1014384


Overview

Basic Information
Taxon OID3300031140 Open in IMG/M
Scaffold IDGa0308024_1014384 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #420
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2328
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011889Metagenome / Metatranscriptome286Y
F039830Metagenome / Metatranscriptome163Y
F066157Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0308024_10143845F039830N/AMWSSPLELYPIHVAPTLAPEGQRPLIEPTTHTVNAEYLVVQPSREPYGIPQEYTRRVWIC
Ga0308024_10143846F066157AGGMWAIVLATMLASGEPQVPLIMSSYSTLDNCRKELLRVGTIGGYEPVVSPMVGLAVVNVEAEKTTTAFCVKDMRSI
Ga0308024_10143848F011889N/AQEKGLAYVAASPQEWAENAVHNRCAVAIDEIYGIEVARMTADPDITTIPADKDAVVLAANVQTAAQRNEAAAAASPE

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