Scaffold Ga0308024_1013873

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1013873
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2382
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F017844	Metagenome / Metatranscriptome	238	N
F034394	Metagenome	175	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_10138731	F017844	N/A	RLFALDTSDAEGYGYPRIGIQVAIPTEYYEATRRSAGYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL
Ga0308024_10138732	F016619	N/A	MAITIVQNADHKSLTGKTLSIQAELTSKLKSTIVDVTYAAGDNYATGGNVVDLSLGSRISTVIGAQILHSSAGLLLQYVPAAAGAAATGKIKCFGQNPTSATATVIALEELDSADTAVNSMTIRIRIIGY
Ga0308024_10138733	F087902	N/A	MTYTNHNVKDVAGTSTVKAGHGVIVAVYVTKAGASGDKIVFHNGVDASAPVEFTVYGEGIQHVQDIFRRFEAGIHVVATGSTAKYIVVYK
Ga0308024_10138734	F034394	N/A	MVTTTTYCTVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPVFLQHRNIHILDGTEGDKIEVWKGESDTWENVVGQNQWYNCEYERGTLHLRGYLFTILRKNRIRVTYRYGGDNFAGDTVIPLDVTDAIIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRYWQEDIDLCISNRREVFVIP