Scaffold Ga0308024_1004520

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1004520
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4537
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F011190	Metagenome / Metatranscriptome	294	Y
F086307	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_100452012	F001235	AGGA	LPTELNTNENANDMTKKLWERHQGDEFTKVSNYKEAVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCNSYKFHIEQVNGRFCNTCHKRIAKVTKEYNQKGGFMKTDPFWISMRKKHGKDWKKIMGGYTKGNRR
Ga0308024_10045202	F086307	AGGAG	MSIASAINDLLNLLHEEWLPEDRKDIIKQLLIDMIDKMEDNMSMDDLR
Ga0308024_10045206	F011190	N/A	MMIFDSFIKGLKKSFDGKDHLREINTCRRCSKPCFFDSCLKCEVDDVYKEHNKKKD