Scaffold Ga0308024_1003881

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1003881
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4942
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006200	Metagenome / Metatranscriptome	379	Y
F013232	Metagenome / Metatranscriptome	273	Y
F015402	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_100388110	F015402	N/A	MGRVKEMAIDLQLNPSDIENELYFRNDYDYQYSEWLKSEEFVEYINAELDSTRPRYSEFDIMKATRYASEQITINPEEVGKQVYDMLYSEKIEEYLCCKKI
Ga0308024_10038817	F013232	AGGA	MSDREIMNAKVGIPEWWKPGIAFLKEEWIKHPYLKQFSKVGCTPKNLCTCSKPKLVELWEHDSCVRGRIDTNVCIKCTNVHSFNIIR
Ga0308024_10038819	F006200	N/A	MSKTTEDWLEELVGKYSIPSDDTEVKDKRGMLSENQLKNLSNGKS