Scaffold Ga0308024_1003610

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1003610
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5147
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F056888	Metagenome / Metatranscriptome	137	N
F074009	Metagenome	120	N
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_100361010	F092887	AGGAGG	MVISKPVRKNKKNLTSVVSVERPRKVSTHTTIINTLGMYKKGLPLTEIQYKGNISSMGNLHHTIQFMVRAGEIIKEKCPHCSSTELYKLNI
Ga0308024_10036104	F007003	N/A	MFGIKLKLMIHYFTKNIDEKKYNDIIQRIIMINGHDGTSNSGYKAWKNFEDNWELNIIPVTDQEDFKSFYEHLDVETSDGIAWGVTGMKVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRVYDSPEGKANTRAAAATVIVHDNWYGSKETIKVWIRWGLIWLPITIPFIPVKVAKKIYAI
Ga0308024_10036105	F074009	N/A	MGTKIKGKYAGQCKICGSDWKVGEDIFYQKDPKAICSDKECFEEQGGKFTPYASQGTLTSSSGGWGKTPIITKLPEVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE
Ga0308024_10036106	F056888	N/A	MNVSEVLDIKGSHENSQKLVAGDKITIQGFKIKNVDEVGAEVVEISTTEGLRHSFGKTVIGQAKSDYWKDVVQKCVDKDAADGLDAYVVEKEAEKTGRMMLCLSMFPPKN