Scaffold Ga0308024_1003344

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308024_1003344

Scaffold Ga0308024_1003344

Overview

Basic Information
Taxon OID	3300031140 Open in IMG/M
Scaffold ID	Ga0308024_1003344 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #420
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5379
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5596	Long. (^o)	77.8957	Alt. (m)		Depth (m)	37
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F009987	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_10033447	F007004	AGG	MKNIILGICLVVFIGCANSNAYERPTVRIVGEAQMVKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCREGG
Ga0308024_10033448	F009987	AGGAGG	MIGSIIGNALGLGLKIMDKIEKNSDKASFEEFKARKKEMDNSLVDKDVEGIDSMFEYLADRARGGSTGRKG

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