Scaffold Ga0308024_1003257

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308024_1003257

Scaffold Ga0308024_1003257

Overview

Basic Information
Taxon OID	3300031140 Open in IMG/M
Scaffold ID	Ga0308024_1003257 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #420
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5454
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5596	Long. (^o)	77.8957	Alt. (m)		Depth (m)	37
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097481	Metagenome	104	Y
F100935	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_100325711	F097481	GGAG	MKAEKVYTLKIPRAQYDRLGSSFDLDNTFFDKLLDDDHVVFHVSENQRKHFSTYAKSNTNHRYWICQMFLPKNISKYEYKMVTA
Ga0308024_10032576	F100935	GGAG	MKTLPLNQINYALKDIMETLAIWRDDKELDDPYILKLYREFDKLIVMKQKIVEKR

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