Scaffold Ga0308024_1002407

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1002407
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6512
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023243	Metagenome	211	N
F077486	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_100240711	F077486	N/A	MLTHLDSLLTESERNNMFRNNKISSNAVNMFKLDIVKVYAKKDLLKDILKCPKLQKKHKLLSFNPIECN
Ga0308024_10024074	F023243	GAG	MSPEIELDLYEITTAAQTGLLRVTESMKQKQEWWHGYKGTLEDKIAKSISGAMAEIALCVYLKTPFEFHTNVGSAPDVKYKNYNIQVRSQTPKKNDNNSLIIRPGGVKPNEIYVFVLSEAPKFTIKGFINSSAVIGKDDYLTDFNLARPKVWAVPLKILNPIILLKDESLN