Scaffold Ga0308024_1000789

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1000789
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12150
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F010167	Metagenome	307	Y
F048916	Metagenome	147	Y
F056153	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_100078911	F048916	N/A	MVGELVAPTANFALGLYNADTYYSKECAWYEEIKLDPATKQWLTDNNPPKIVITDLSKVARNNDIYKEVCEPKKDTEDTTPDE
Ga0308024_100078912	F002078	AGGAG	MDIAAMFEGQGWFEIAGQVVLVFTALTGALPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAASADVEKEIDEAKAKVRVRNTMPDVLDGL
Ga0308024_100078914	F056153	N/A	MDSPAELAGFIESVGVPVATAIGLGGALWWLIKYVLGSIVEKITEAQAQTEADIKDLKGIVIALIDKTTVAQSDLIRLDTMIRVRYGLAPDERRIGRNPDDKVK
Ga0308024_10007894	F010167	GGAG	MVFAHVSLIQEGQAALFYRHTKKMKGYMIAGTLIGPDLIDKMNFAKIWKYFVSEVVQADDIYCSILVGAENSMFTNYLDYYDTIDGLKIYKVDNYLKQKYSDYDKHVERKVPIKSE