Scaffold Ga0308024_1000120

Overview

Basic Information

• Taxon OID: 3300031140
• Scaffold ID: Ga0308024_1000120
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33603
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F029567	Metagenome / Metatranscriptome	188	Y
F035963	Metagenome	171	Y
F059346	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308024_10001202	F059346	AGTAG	MDKVLEGAWALFVAIGWFFINRITAKVDALEKDKADNSALGRHSELIHETDRRIDELQHTTVPRQEYKSDIGMLHQRANELEKSKEDKVTDIRIVGGDESNAAKKGK
Ga0308024_10001203	F035963	GGA	LDKINEVVVAVSGAGLGLGLWICKRLFKSIDIAHERIDKLESKQVDRIYLETQLAPIRQDLNIILKHLLENKK
Ga0308024_10001204	F002078	AGGAG	MEMMMSQSWFQIAGEIVLMFTALTGAMPDRFVAKIPVLGKLWPIFNWLAGNVFNNVNHPKGMAALKEVKDEIDKAKSEVSDRVKLPDVLDGV
Ga0308024_10001205	F029567	N/A	MGCSALTQMAAPVANFGIGLYNADSYYSKECLWYEEIKFSAETKEWLRSINPPEQVIKDIAQVAKNNDLFKKVCK