Scaffold Ga0170823_17462252

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170823_17462252

Scaffold Ga0170823_17462252

Overview

Basic Information
Taxon OID	3300031128 Open in IMG/M
Scaffold ID	Ga0170823_17462252 Open in IMG/M
Source Dataset Name	Oak Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3850
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Champenoux
Coordinates	Lat. (^o)	48.7184	Long. (^o)	6.3471	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095898	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170823_174622525	F095898	N/A	SVLAGTRNVVALYGDERMLEVPAGFSRRLEKRLAKNALGIRWSSWSTWLVPVAAMALVAGTLMLTSSARSPLKSQHAEQAKDIPPNMTVVVSAGAKLFHVPGCEFIHDKATERTLTAREAMREGYVPCPRCLRQYLKTGLILGHEDEGAAAKDEPEEVFRTAGQ

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