Scaffold Ga0170823_17442491

Overview

Basic Information

• Taxon OID: 3300031128
• Scaffold ID: Ga0170823_17442491
• Source Dataset Name: Oak Summer Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1098
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7184
  • Long. (^o): 6.3471

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002770	Metagenome / Metatranscriptome	531	Y
F003044	Metagenome	511	Y
F004064	Metagenome	455	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170823_174424911	F003044	GGAGG	VEFRTTVTCSKCKQPILSGQGFGFVYFKIPGKEGYRFFHRTFGGADCW
Ga0170823_174424912	F002770	N/A	MNIIRTQLFRAIVIITLISSCVYLAYGKESPNIYIVRNVAWNDFIAQIASVPYEAPQDSLSKEMLIIQRFLKSHETEVRVGIYDVEVFKTIDQARARLQKADRDLETLRNELSYKEEQARLGR
Ga0170823_174424913	F004064	N/A	MRGAFVVKLGPETRPSEGRFEGLVEEVDSGRELRFRSAGELMNFLGQRFDLAKISVGETRASNKIEPVPSRKKNPRKERKPS