Scaffold Ga0170823_16810423

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170823_16810423

Scaffold Ga0170823_16810423

Overview

Basic Information
Taxon OID	3300031128 Open in IMG/M
Scaffold ID	Ga0170823_16810423 Open in IMG/M
Source Dataset Name	Oak Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1120
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	France: Champenoux
Coordinates	Lat. (^o)	48.7184	Long. (^o)	6.3471	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080422	Metagenome / Metatranscriptome	115	N
F097937	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170823_168104231	F080422	AGGAG	MNQPPVPPWKTLLERKTAEHYRRFHSGTLNLTRRGFLSTAAGATGLLAASQFALSTQALADQDARTTAEPNPIPGGGTAFGFHVHHNPLPNDPTLPLTIFNTAQGDPSEIGDFNGLVVDTMIRGLGTGDGVTFADDTKPGSLAFRADMGAMRGEYVGEDGKHHHGSFVFI
Ga0170823_168104233	F097937	N/A	MDAHDLLNNLTGGQGFSGNGLNIPPIAAVPATVSFDIEWSGVIESQKVVNENQSFRGQFVKTGATINWSAQPSQPGAFSFVSEAPNPMQSKQNKARKKLN

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