Scaffold Ga0170823_15636884

Overview

Basic Information

• Taxon OID: 3300031128
• Scaffold ID: Ga0170823_15636884
• Source Dataset Name: Oak Summer Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 971
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7184
  • Long. (^o): 6.3471

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038884	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170823_156368841	F038884	GGCGG	MDLLRPFRTPSGRVVGIMGPARCLVPFFGMLICVSALWLPILSAQSIKPRAAKVQSPRVSDFEQKTDSLIERFSTSGRTLVDSLIELAYKYQVPMAIEYADREATTLPLNLEFHNKSFRGIVEAIVKKYPQYRVSFSNGIVDIFSPMAREDSSNLLNKIMKDFSVTEMETRRADSQLFCAVAQAAGSGGCGGSLAAGQWDPLRITLHLHNVRVYEILNAIVAQNGRAIWT