Scaffold Ga0170822_14562419

Overview

Basic Information

• Taxon OID: 3300031122
• Scaffold ID: Ga0170822_14562419
• Source Dataset Name: Oak Spring Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1774
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7184
  • Long. (^o): 6.3471

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078996	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170822_145624193	F078996	AGGAG	LKRAWMRFWASVSLGLLATSAIGVAARGPVQSKSYPRRNETILARISPGRTSLARAQALWRNPTKNDEQNHSAIWQSCDGDELNVNFSDEGMIQSVWLSKMKTKPPHACANAVAMTTKFSTGMGLRLGDAAARVLQLYGEPDSRSPSTKDQQRLELLYYSFDWAGPDLPQMMEVLCTVEKDGKPGRVIEITLSASSL