NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138345_11067885

Scaffold Ga0138345_11067885


Overview

Basic Information
Taxon OID3300031121 Open in IMG/M
Scaffold IDGa0138345_11067885 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S15_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1459
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-2.7Long. (o)-28.5Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025212Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0138345_110678851F025212N/AMMIIMHDTSPLLCSLVGLLALTTPSLSASSQSWTPIGRSSNALESNSQHLINRRTASYSQDTLEGGEGNVDLHNKEFCVDVSTYEPVVWQEVDAEQCDTVFVKKCEERSEEVCADVTETRCEVLPYTECEMGMESQTYTKSILQPKLFVEKTCTQGRKMIPHVKMLPECRNVTKQNCVTLWETDPEGNQVWAGNEACEPVTWQECKLVPKTVKFIVPQINCTDGQEVWYHEPEPATDVRMTNTFTCEVKSTTSCESQVRPDCKRVTFQECREVPVTNCEPKTVHKPTQEKLHRKKCLLPDEKEADAPSDSYGQPQSPPLGTYSG

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