Scaffold Ga0061019_13980495

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0061019_13980495

Scaffold Ga0061019_13980495

Overview

Basic Information
Taxon OID	3300031118 Open in IMG/M
Scaffold ID	Ga0061019_13980495 Open in IMG/M
Source Dataset Name	Coassembly of Cow X and Y Switchgrass
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	509
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location Name	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0061019_139804951	F012184	AGGAG	MNVNEILNAILSLSPDASMARQNKTNFIVVPCDDGVAKVSVGVALAKDTKTCKAFNLEAAKAEYKAWEAEKALREAEKASKPAKAKGVNPEAQARRDALDKAISEMPAFADYTATDILNALAGVVPENTLVMAIGSSAKRLVENGTLVV

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